論文リスト (Google Scholar Citations)
[56] 石本健太
細胞遊泳から始める「生き物」の力学
日本物理学会誌, to appear.
[55] Y. Hiruta and K. Ishimoto
Reciprocal microswimming in fluctuating and confined environments
Physical Review Research, 6 (2024) 013117.
doi: 10.1103/PhysRevResearch.6.013117
[54] M. P. Dalwadi, C. Moreau, E. A. Gaffney, B. J. Walker and K. Ishimoto
Generalised Jeffery's equations for rapidly spinning particles. Part 2: Helicoidal objects with chirality
Journal of Fluid Mechanics, 979 (2024) A2.
doi: 10.1017/jfm.2023.924
[53] M. P. Dalwadi, C. Moreau, E. A. Gaffney, K. Ishimoto and B. J. Walker
Generalised Jeffery's equations for rapidly spinning particles. Part 1: Spheroids
Journal of Fluid Mechanics, 979 (2024) A1.
doi: 10.1017/jfm.2023.923
[52] K. Ishimoto and M. Iima
Preface: Advances in the physics of biofluid locomotion
Journal of the Physical Society of Japan, 92(12) (2023). (pdf)
研究内容がJPS Hot Topicsで紹介されました：“Exploring recent advances in the physics of biofluid locomotion”
[51] K. Ishimoto, C. Moreau and K. Yasuda
Odd elastohydrodynamics: Non-reciprocal living material in a viscous fluid
PRX Life, 1 (2023) 023002.
論文がNew Scientistで紹介されました：“Sperm caught breaking Newton's third law of motion”
論文がAPS March Meeting 2024の招待講演に選ばれました
[50] A. Kobayashi, K. Yasuda, K. Ishimoto, L.-S. Lin, I. Sou, Y. Hosaka and S. Komura
Odd elasticity of a catalytic micromachine
Journal of the Physical Society of Japan, 92 (2023) 074801.
[49] K. Ishimoto
Jeffery's orbits and microswimmers in flows: A theoretical review
Journal of the Physical Society of Japan, 92 (2023) 062001.
論文が日本物理学会誌 「JPSJの最近の注目論文から」で紹介されました（日本物理学会誌, 78 (2023) 717）
論文がJPS Hot Topicsで紹介されました：“Microswimmer hydrodynamics through the lens of Jeffery's orbits”
[48] K. Ishimoto, E. A. Gaffney and D. J. Smith
Squirmer hydrodynamics near a periodic surface topography
Frontiers in Cell and Developmental Biology, 11 (2023) 1123446.
doi: 10.3389/fcell.2023.1123446
[47] B. J. Walker, K. Ishimoto and E. A. Gaffney
Systematic parameterization for minimal models of microswimming
Physical Review Fluids, 8 (2023) 034102.
doi: 10.1103/PhysRevFluids.8.034102
[46] B. J. Walker, K. Ishimoto and E. A. Gaffney
A hydrodynamic slender-body theory for local rotation at zero Reynolds number
Physical Review Fluids, 8 (2023) 034101.
doi: 10.1103/PhysRevFluids.8.034101
[45] L.-S. Lin, K. Yasuda, K. Ishimoto, Y. Hosaka and S. Komura
Onsager's variational principle for nonreciprocal system with odd elasticity
Journal of the Physical Society of Japan, 92 (2023) 033001.
[44] K. Yasuda and K. Ishimoto
The most probable path of an active Brownian particle
Physical Review E, 106 (2022) 064120.
doi: 10.1103/PhysRevE.106.064120
[43] K. Ishimoto
A multi-scale numerical simulation of quasi-two-dimensional bacterial turbulence using a regularized Stokeslet representation
Springer Proceedings in Mathematics & Statistics, 429 (2023) 215-226.
doi: 10.1007/978-3-031-35871-5_11
[42] T. Ayukawa, M. Akiyama, Y. Hozumi, K. Ishimoto, J. Sasaki, H. Senoo, T. Sasaki and M. Yamazaki
Tissue flow regulates planar cell polarity independently of the Frizzled core pathway
Cell Reports, 40 (2022) 111388.
doi: 10.1016/j.celrep.2022.111388
[41] K. Yasuda, K. Ishimoto, A. Kobayashi, L.-S. Lin, I. Sou, Y. Hosaka and S. Komura
Time-correlation functions for odd Langevin systems
The Journal of Chemical Physics, 157 (2022) 095101.
doi: 10.1063/5.0095969
[40] B. J. Walker, K. Ishimoto, C. Moreau, E. A. Gaffney and M. P. Dalwadi
Emergent rheotaxis of shape-changing swimmers in Poiseuille flow
Journal of Fluid Mechanics, 944 (2022) R2.
doi: 10.1017/jfm.2022.474
論文がFocus on Fluidsで紹介されました：「When do shape changers swim upstream?」
[39] K. Ishimoto, C. Moreau and K. Yasuda
Self-organized swimming with odd elasticity
Physical Review E, 105 (2022) 064603.
doi: 10.1103/PhysRevE.105.064603
論文が京都大学ウェブページで紹介されました：「自ら流体中を泳ぐ「奇弾性体」の発見」
論文がEurekAlert!で紹介されました：「Never too odd to learn how to swim」
研究内容が日本流体力学会年会「注目研究」に選ばれました：「奇弾性体の微小遊泳理論」
[38] B. J. Walker, K. Ishimoto, E. A. Gaffney and C. Moreau
The control of particles in the Stokes limit
Journal of Fluid Mechanics, 942 (2022) A1.
doi: 10.1017/jfm.2022.253
[37] E. A. Gaffney, M. P. Dalwadi, C. Moreau, K. Ishimoto and B. J. Walker
Canonical orbits for rapidly deforming planar microswimmers in shear flow
Physical Review Fluids, 7 (2022) L022101.
doi: 10.1103/PhysRevFluids.7.L022101
[36] B. J. Walker, K. Ishimoto, E. A. Gaffney, C. Moreau and M. P. Dalwadi
The effects of rapid yawing on simple swimmer models and planar Jeffery's orbits
Physical Review Fluids, 7 (2022) 023101.
doi: 10.1103/PhysRevFluids.7.023101
[35] C. Moreau and K. Ishimoto
Driving a microswimmer with wall-induced flow
Micromachines, 12 (2021) 1025.
doi: 10.3390/mi12091025
[34] C. Moreau, K. Ishimoto, E. A. Gaffney and B. J. Walker
Control and controllability of microswimmers by a shearing flow
Royal Society Open Science, 8 (2021) 211141.
doi: 10.1098/rsos.211141
[33] E. A. Gaffney, K. Ishimoto and B. J. Walker
Modelling motility: the mathematics of spermatozoa
Frontiers in Cell and Developmental Biology, 9 (2021) 710825.
doi: 10.3389/fcell.2021.710825
[32] B. J. Walker, K. Ishimoto and E. A. Gaffney
Efficient simulation of filament elastohydrodynamics in three dimensions
Physical Review Fluids, 5 (2020) 123103.
doi: 10.1103/PhysRevFluids.5.123103
論文がEditors' Suggestionに選ばれました
[31] K. Ishimoto, E. A. Gaffney and B. J. Walker
Regularized representation of bacterial hydrodynamics
Physical Review Fluids, 5 (2020) 093101.
doi: 10.1103/PhysRevFluids.5.093101
[30] K. Ishimoto
Jeffery orbits for an object with discrete rotational symmetry
Physics of Fluids, 32 (2020) 081904.
doi: 10.1063/5.0015056
[29] B. J. Walker, M. P. Curtis, K. Ishimoto and E. A. Gaffney
A regularised slender-body theory of non-uniform filaments
Journal of Fluid Mechanics, 899 (2020) A3.
doi: 10.1017/jfm.2020.434
[28] B. J. Walker, S. Phuyal, K. Ishimoto, C.-K. Tung and E. A. Gaffney
Computer-assisted beat-pattern analysis and the flagellar waveforms of bovine spermatozoa
Royal Society Open Science, 7 (2020) 200769.
doi: 10.1098/rsos.200769
[27] K. Ishimoto
Helicoidal particles and swimmers in a flow at low Reynolds number
Journal of Fluid Mechanics, 892 (2020) A11.
doi: 10.1017/jfm.2020.142
[26] B. J. Walker, K. Ishimoto, H. Gadêlha and E. A. Gaffney
Filament mechanics in a half-space via regularised Stokeslet segments
Journal of Fluid Mechanics, 879 (2019) 808-833.
doi: 10.1017/jfm.2019.723
[25] K. Ishimoto
Bacterial spinning top
Journal of Fluid Mechanics, 880 (2019) 620-652.
doi: 10.1017/jfm.2019.714
論文が京都大学ウェブページで紹介されました：「微生物の運動に潜む柔らかな力学メカニズムを解明- バクテリア「独楽」は如何にして廻るか-」
[24] B. J. Walker, K. Ishimoto and E. A. Gaffney
Pairwise hydrodynamic interactions of synchronized spermatozoa
Physical Review Fluids, 4 (2019) 093101.
doi: 10.1103/PhysRevFluids.4.093101
[23] K. Ishimoto and E. Lauga
The N-flagella problem: Elastohydrodynamic motility transition of multi-flagellated bacteria
Proceedings of the Royal Society A, 475 (2019) 20180690.
研究内容が日本流体力学会年会「注目研究」に選ばれました：「N鞭毛問題：バクテリア遊泳の安定性」
研究内容の図が日本流体力学会誌「ながれ」38巻(2019)6号の表紙に選ばれました
[22] B. J. Walker, K. Ishimoto and R. J. Wheeler
Automated identification of flagella from videomicroscopy via the medial axis transform
Scientific Reports, 9 (2019) 5015.
doi: 10.1038/S41598-019-41459-9
[21] B. J. Walker, K. Ishimoto, R. J. Wheeler and E. A. Gaffney
Response of monoflagellate pullers to a shearing flow: A simulation study of microswimmer guidance
Physical Review E, 98 (2018) 063111.
doi: 10.1103/PhysRevE.98.063111
[20] B. J. Walker, R. J. Wheeler, K. Ishimoto and E. A. Gaffney
Boundary behaviours of Leishmania mexicana: a hydrodynamic simulation study
Journal of Theoretical Biology, 462 (2019) 311-320.
doi: 10.1016/j.jtbi.2018.11.016
[19] K. Ishimoto and E. A. Gaffney
Hydrodynamic clustering of human sperm in viscoelastic fluids
Scientific Reports, 8 (2018) 15600.
doi: 10.1038/s41598-018-33584-8
[18] K. Ishimoto and E. A. Gaffney
An elastohydrodynamical simulation study of filament and spermatozoan swimming driven by internal couples
IMA Journal of Applied Mathematics, 83 (2018) 655-679.
[17] K. Ishimoto, H. Gadêlha, E. A. Gaffney, D. J. Smith and J. Kirkman-Brown
Human sperm swimming in a high viscous mucus analogue
Journal of Theoretical Biology, 446 (2018) 1-10.
doi: 10.1016/j.jtbi.2018.02.013
[16] K. Ishimoto
Guidance of microswimmers by wall and flow: Thigmotaxis and rheotaxis of unsteady squirmers in two and three dimensions
Physical Review E, 96 (2017) 043101.
doi: 10.1103/PhysRevE.96.043103
[15] K. Ishimoto and E. A. Gaffney
Boundary element methods for particles and microswimmers in a linear viscoelastic fluid
Journal of Fluid Mechanics, 831 (2017) 228-251.
doi: 10.1017/jfm.2017.636
[14] K. Ishimoto and D. G. Crowdy
Dynamics of a treadmilling microswimmer near a no-slip wall in simple shear
Journal of Fluid Mechanics, 821 (2017) 647-667.
doi: 10.1017/jfm.2017.220
[13] K. Ishimoto, H. Gadêlha, E. A. Gaffney, D. J. Smith and J. Kirkman-Brown
Coarse-graining the fluid flow around a human sperm
Physical Review Letters, 118 (2017) 124501.
doi: 10.1103/PhysRevLett.118.124501
論文が京都大学ウェブページで紹介されました：「数理の目で見る精子の旅」
論文がBBC News で紹介されました：“Sperm swimming technique 'all down to simple maths’”.
インタビュー記事が The Japan Times に掲載されました：“Kyoto University professor does the math and finds that sperm swim to a beat”.
[12] K. Ishimoto, M. Ikawa and M. Okabe
The mechanics clarifying counterclockwise rotation of most IVF eggs in mice
Scientific Reports, 7 (2017) 43456.
doi: 10.1038/srep43456
[11] K. Ishimoto and E. A. Gaffney
Mechanical tuning of mammalian sperm behaviour by hyperactivation, rheology and substrate adhesion: a numerical exploration
Journal of the Royal Society Interface, 13 (2016) 20160633.
[10] K. Ishimoto
Hydrodynamic evolution of sperm swimming: Optimal flagella by a genetic algorithm
Journal of Theoretical Biology, 399 (2016) 166-174.
doi: 10.1016/j.jtbi.2016.03.041
[9] K. Ishimoto, J. Cosson and E. A. Gaffney
A simulation study of sperm motility hydrodynamics near fish eggs and spheres
Journal of Theoretical Biology, 389 (2016) 187-197.
doi: 10.1016/j.jtbi.2015.10.013
[8] K. Ishimoto and E. A. Gaffney
Modelling spermatozoan swimming: its capabilities and limitations for contributing to the understanding of sperm guidance
in “Flagellar Mechanics and Sperm Guidance" (Ed. Jacky Cosson, Bentham Science Publishers) (2015) 315-348.
doi: 10.2174/97816810812811150101
[7] K. Ishimoto and E. A. Gaffney
Fluid flow and sperm guidance: a simulation study of hydrodynamic sperm rheotaxis
Journal of the Royal Society Interface, 12 (2015) 20150172.
[6] K. Ishimoto and E. A. Gaffney
A study of spermatozoan swimming stability near a surface
Journal of Theoretical Biology, 360 (2014) 187-199.
doi: 10.1016/j.jtbi.2014.06.034
[5] K. Ishimoto and E. A. Gaffney
Swimming efficiency of spherical squirmers: Beyond the Lighthill theory
Physical Review E, 90 (2014) 012704.
doi: 10.1103/PhysRevE.90.012704
[4] 石本健太, 山田道夫
座標に基づいた帆立貝定理の証明
日本流体力学会誌「ながれ」, 33 (2014) 237-240. (pdf)
[3] K. Ishimoto and E. A. Gaffney
Squirmer dynamics near a boundary
Physical Review E, 88 (2013) 062702.
doi: 10.1103/PhysRevE.88.062702
[2] K. Ishimoto
A spherical squirming swimmer in unsteady Stokes flow
Journal of Fluid Mechanics, 723 (2013) 163-189.
doi: 10.1017/jfm.2013.131
[1] K. Ishimoto and M. Yamada
A coordinate-based proof of the scallop theorem
SIAM Journal on Applied Mathematics, 72 (2012) 1686-1694.
doi: 10.1137/110853297
会議録・講究録
[8] K. Ishimoto
Problems in microswimmer hydrodynamics
数理解析研究所講究録、2266 (2023) 131-140.
[7] 石本健太, Clément Moreau, 安田健人
奇弾性体の微小遊泳理論
日本流体力学会誌「ながれ」, 41 (2022) 411-414. (pdf)
[6] 石本健太, Eric Lauga
N鞭毛問題：バクテリア遊泳の安定性
日本流体力学会誌「ながれ」, 38 (2019) 407-410. (pdf)
研究内容の図が表紙に選ばれました
[5] 石本健太
微生物遊泳における計測問題
数理解析研究所講究録, 1940 (2015) 1-15. (pdf)
hdl: 2433/223797
[4] 石本健太
精子の遊泳と境界の相互作用
数理解析研究所講究録, 1900 (2014) 145-149. (pdf)
hdl: 2433/195916
[3] 石本健太, 小泉吉輝, 鈴木理
肝臓におけるアルコール代謝の数理モデリング：肝障害の発生メカニズムとその予防策
数理解析研究所講究録, 1863 (2013) 29-37. (pdf)
hdl: 2433/195329
[2] 石本健太
球形微生物の運動における慣性の影響
数理解析研究所講究録, 1808 (2012) 56-72. (pdf)
hdl: 2433/194447
[1] 石本健太、山田道夫
微生物の運動と流体力学：帆立貝定理とその破れ
数理解析研究所講究録, 1796 (2012) 15-21. (pdf)
hdl: 2433/172918
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